|
Assessing differences in communities sequenced at two diff. sequencing facilities (same primers)
|
|
2
|
240
|
January 4, 2024
|
|
LDA score(log 10)
|
|
0
|
219
|
December 18, 2023
|
|
Degap.seqs with OTU abundance sorting
|
|
1
|
203
|
December 7, 2023
|
|
Tree file for ASV
|
|
1
|
208
|
December 5, 2023
|
|
Using ASV or OTU in 16s analysis
|
|
1
|
384
|
December 5, 2023
|
|
Installing mothur error
|
|
7
|
304
|
December 5, 2023
|
|
Beginner questions: Working step for organism identification
|
|
1
|
241
|
November 30, 2023
|
|
Pcr.seqs does not remove logical amount of sequences with different values of pdiffs/rdiffs
|
|
14
|
848
|
November 28, 2023
|
|
The best region for 16S sequencing
|
|
1
|
273
|
November 2, 2023
|
|
Issue with venn command
|
|
3
|
307
|
November 2, 2023
|
|
Phylotypes classification at different taxonomic levels
|
|
1
|
234
|
October 30, 2023
|
|
Get.oturep using abundance method
|
|
11
|
378
|
October 27, 2023
|
|
Using pcr.seqs without a forward primer in the oligo file results in first four bases being removed
|
|
2
|
342
|
October 23, 2023
|
|
Alignment command
|
|
2
|
275
|
October 18, 2023
|
|
Overlapping V3-V4 using v2 2x250 bp
|
|
3
|
503
|
October 18, 2023
|
|
Unique names issue
|
|
2
|
261
|
October 18, 2023
|
|
Running mothur in hpc with conda
|
|
10
|
604
|
October 10, 2023
|
|
Generating ASVs that all have a size of one
|
|
12
|
544
|
October 10, 2023
|
|
Database contains Oomycete
|
|
1
|
307
|
September 18, 2023
|
|
V4 region - Archaea and Bacteria at genus level
|
|
3
|
351
|
September 14, 2023
|
|
Alignment issues
|
|
4
|
492
|
September 5, 2023
|
|
Using a custom taxonomic database
|
|
3
|
313
|
September 5, 2023
|
|
Co-ordinates for aligning v5-v7 region
|
|
13
|
685
|
September 1, 2023
|
|
Lefse [ERROR]: requesting groups not present in files, aborting. Segmentation fault: 11
|
|
9
|
687
|
August 27, 2023
|
|
Phylogenetic Tree File
|
|
1
|
354
|
July 25, 2023
|
|
Blank file after screen
|
|
1
|
209
|
July 25, 2023
|
|
Help formatting fasta for mock community
|
|
1
|
294
|
July 25, 2023
|
|
how tp get asv file
|
|
1
|
339
|
July 11, 2023
|
|
Discrepancy between number of reads and group counts from make.contigs
|
|
6
|
317
|
July 6, 2023
|
|
Help! Archaea microbial community
|
|
1
|
258
|
June 27, 2023
|