|
Using ASV or OTU in 16s analysis
|
|
1
|
377
|
December 5, 2023
|
|
Installing mothur error
|
|
7
|
272
|
December 5, 2023
|
|
Beginner questions: Working step for organism identification
|
|
1
|
236
|
November 30, 2023
|
|
Pcr.seqs does not remove logical amount of sequences with different values of pdiffs/rdiffs
|
|
14
|
826
|
November 28, 2023
|
|
The best region for 16S sequencing
|
|
1
|
266
|
November 2, 2023
|
|
Issue with venn command
|
|
3
|
294
|
November 2, 2023
|
|
Phylotypes classification at different taxonomic levels
|
|
1
|
222
|
October 30, 2023
|
|
Get.oturep using abundance method
|
|
11
|
345
|
October 27, 2023
|
|
Using pcr.seqs without a forward primer in the oligo file results in first four bases being removed
|
|
2
|
328
|
October 23, 2023
|
|
Alignment command
|
|
2
|
265
|
October 18, 2023
|
|
Overlapping V3-V4 using v2 2x250 bp
|
|
3
|
483
|
October 18, 2023
|
|
Unique names issue
|
|
2
|
249
|
October 18, 2023
|
|
Running mothur in hpc with conda
|
|
10
|
537
|
October 10, 2023
|
|
Generating ASVs that all have a size of one
|
|
12
|
498
|
October 10, 2023
|
|
Database contains Oomycete
|
|
1
|
293
|
September 18, 2023
|
|
V4 region - Archaea and Bacteria at genus level
|
|
3
|
331
|
September 14, 2023
|
|
Alignment issues
|
|
4
|
471
|
September 5, 2023
|
|
Using a custom taxonomic database
|
|
3
|
297
|
September 5, 2023
|
|
Co-ordinates for aligning v5-v7 region
|
|
13
|
643
|
September 1, 2023
|
|
Lefse [ERROR]: requesting groups not present in files, aborting. Segmentation fault: 11
|
|
9
|
670
|
August 27, 2023
|
|
Phylogenetic Tree File
|
|
1
|
341
|
July 25, 2023
|
|
Blank file after screen
|
|
1
|
202
|
July 25, 2023
|
|
Help formatting fasta for mock community
|
|
1
|
285
|
July 25, 2023
|
|
how tp get asv file
|
|
1
|
328
|
July 11, 2023
|
|
Discrepancy between number of reads and group counts from make.contigs
|
|
6
|
302
|
July 6, 2023
|
|
Help! Archaea microbial community
|
|
1
|
255
|
June 27, 2023
|
|
Connecting to AWS instance via Putty or SSH
|
|
0
|
319
|
June 22, 2023
|
|
Archaea community
|
|
1
|
305
|
June 12, 2023
|
|
Erro no Cluster.split
|
|
1
|
182
|
May 2, 2023
|
|
The cluster step failed
|
|
1
|
227
|
May 2, 2023
|