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Help with ARB database and make a ecoli_v3.fasta file
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2
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125
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March 15, 2024
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Phylogenetic tree count_table error
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1
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99
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March 14, 2024
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Remove.lineage gets stuck on alignreport file
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3
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96
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March 7, 2024
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Dist.shared vs summary.shared commands for beta diversity
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5
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158
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February 26, 2024
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Pre.cluster is very lslow and the fasta file which it produce is blank
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6
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531
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February 20, 2024
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Stability.contigs.count_table
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4
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146
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February 20, 2024
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No summary output after lefse
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2
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130
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January 19, 2024
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Dist file from split.cluster
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1
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143
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January 18, 2024
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Hi, I'm working 16s rRNA analysis. Recently I got my Illumina sequences for my sample. I have my sequence with 001_R1 AND 001_R2 with 155 dual sample sequence. Do I need to rename the fastq files or I should make some oligo for making stability files
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5
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224
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January 12, 2024
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Filter.seqs error: Sequences are not all the same length
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2
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262
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January 9, 2024
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Assessing differences in communities sequenced at two diff. sequencing facilities (same primers)
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2
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197
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January 4, 2024
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LDA score(log 10)
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0
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188
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December 18, 2023
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Degap.seqs with OTU abundance sorting
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1
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195
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December 7, 2023
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Tree file for ASV
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1
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185
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December 5, 2023
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Using ASV or OTU in 16s analysis
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1
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318
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December 5, 2023
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Installing mothur error
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7
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243
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December 5, 2023
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Beginner questions: Working step for organism identification
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1
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233
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November 30, 2023
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Pcr.seqs does not remove logical amount of sequences with different values of pdiffs/rdiffs
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14
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754
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November 28, 2023
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The best region for 16S sequencing
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1
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250
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November 2, 2023
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Issue with venn command
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3
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267
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November 2, 2023
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Phylotypes classification at different taxonomic levels
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1
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202
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October 30, 2023
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Get.oturep using abundance method
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11
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305
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October 27, 2023
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Using pcr.seqs without a forward primer in the oligo file results in first four bases being removed
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2
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316
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October 23, 2023
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Alignment command
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2
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232
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October 18, 2023
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Overlapping V3-V4 using v2 2x250 bp
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3
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415
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October 18, 2023
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Unique names issue
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2
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238
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October 18, 2023
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Running mothur in hpc with conda
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10
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359
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October 10, 2023
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Generating ASVs that all have a size of one
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12
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369
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October 10, 2023
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Database contains Oomycete
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1
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279
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September 18, 2023
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V4 region - Archaea and Bacteria at genus level
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3
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307
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September 14, 2023
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