Summary.seqs "File mismatch detected"

Hi there

I keep getting an error and I don’t know how to fix it…

summary.seqs(fasta= stability.trim.contigs.trim.good.unique.align, count= stability.trim.contigs.trim.good.count_table, processors=5)

Using 5 processors.
[ERROR]: Your count file contains 10115971 unique sequences, but your fasta file contains 3460246. File mismatch detected, quitting command.


1 Like

This usually happens when you get your files out of sync with each other. Can you go back a few steps and try again making sure that you keep your files consistent?