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About the mothur bugs category
|
|
0
|
640
|
September 23, 2009
|
|
Class is missing from the lefse output
|
|
4
|
96
|
October 23, 2025
|
|
Error during pcr.seqs step: Error in reading your fastafile, at position -1. Blank name
|
|
5
|
123
|
October 1, 2025
|
|
You did not provide a class
|
|
9
|
163
|
September 30, 2025
|
|
Issue with bacterial classification using Mothur v1.48.3 and SILVA v138.2
|
|
2
|
71
|
August 19, 2025
|
|
Classify.seqs() marking most sequences as unclassified
|
|
2
|
90
|
July 28, 2025
|
|
Different Results When Using Different Number of Processors (make.contigs() w/t v.1.37.4 and v.1.48.3)
|
|
1
|
83
|
June 25, 2025
|
|
18S Sequences Too Short After Alignment with SILVA nr_v138_2 – Mothur v1.48.0
|
|
6
|
136
|
June 10, 2025
|
|
Merge.outs cannot merge for taxlevel 5(family)
|
|
6
|
127
|
May 15, 2025
|
|
Dynamic variables in mothur for windows
|
|
2
|
62
|
April 20, 2025
|
|
Gz make contigs error
|
|
1
|
60
|
February 17, 2025
|
|
Shared file numOtus column number wrong
|
|
3
|
72
|
February 6, 2025
|
|
Mismatch between otu and shared file
|
|
1
|
49
|
February 6, 2025
|
|
Issue with cluster not making a list file when using method=agc
|
|
1
|
51
|
January 27, 2025
|
|
cluster vsearch; method=agc, no conversion of vsearch output to mothur list format
|
|
4
|
1345
|
August 19, 2019
|
|
Error with classify.seqs(), " **** Exceeded maximum allowed command errors, quitting **** "
|
|
2
|
89
|
November 7, 2024
|
|
Make.shared error when used after phylotype
|
|
1
|
45
|
October 16, 2024
|
|
Chimera.vsearch not removing chimeras - screen.seqs to blame?
|
|
7
|
100
|
October 2, 2024
|
|
Remove.groups - number of sequences removed from fasta table and count has difference of one sequence
|
|
2
|
50
|
September 11, 2024
|
|
Mothur logfiles not found
|
|
1
|
69
|
July 24, 2024
|
|
Order lost after degap.seqs and classify.seqs
|
|
2
|
59
|
July 22, 2024
|
|
Running make.file mothur crashes
|
|
1
|
165
|
May 27, 2024
|
|
Unable to open silva.seed_v138.1
|
|
1
|
130
|
April 16, 2024
|
|
Unable to classify OTU with cluster.split
|
|
1
|
144
|
March 28, 2024
|
|
Summary Seqs command not working
|
|
1
|
165
|
March 26, 2024
|
|
New RDP reference files (v19)
|
|
1
|
237
|
March 26, 2024
|
|
MiSeq SOP problems
|
|
4
|
172
|
March 26, 2024
|
|
LEfSe Class Column missing if the comparison is not pairwise with mothur 1.48.0
|
|
0
|
159
|
February 8, 2024
|
|
LefSe error: about the ram
|
|
0
|
154
|
January 22, 2024
|
|
Error with remove.otus
|
|
3
|
300
|
November 2, 2023
|