|
About the mothur bugs category
|
|
0
|
619
|
September 23, 2009
|
|
Issue with bacterial classification using Mothur v1.48.3 and SILVA v138.2
|
|
3
|
14
|
August 29, 2025
|
|
Classify.seqs() marking most sequences as unclassified
|
|
3
|
28
|
August 7, 2025
|
|
Different Results When Using Different Number of Processors (make.contigs() w/t v.1.37.4 and v.1.48.3)
|
|
2
|
19
|
July 5, 2025
|
|
18S Sequences Too Short After Alignment with SILVA nr_v138_2 – Mothur v1.48.0
|
|
7
|
42
|
June 20, 2025
|
|
Merge.outs cannot merge for taxlevel 5(family)
|
|
7
|
43
|
May 25, 2025
|
|
Dynamic variables in mothur for windows
|
|
3
|
36
|
April 30, 2025
|
|
Gz make contigs error
|
|
2
|
21
|
February 27, 2025
|
|
Shared file numOtus column number wrong
|
|
4
|
27
|
February 16, 2025
|
|
Mismatch between otu and shared file
|
|
2
|
18
|
February 16, 2025
|
|
Issue with cluster not making a list file when using method=agc
|
|
2
|
12
|
February 6, 2025
|
|
cluster vsearch; method=agc, no conversion of vsearch output to mothur list format
|
|
4
|
1324
|
August 19, 2019
|
|
Error with classify.seqs(), " **** Exceeded maximum allowed command errors, quitting **** "
|
|
3
|
48
|
November 17, 2024
|
|
Make.shared error when used after phylotype
|
|
2
|
19
|
October 16, 2024
|
|
Chimera.vsearch not removing chimeras - screen.seqs to blame?
|
|
8
|
48
|
October 12, 2024
|
|
Remove.groups - number of sequences removed from fasta table and count has difference of one sequence
|
|
3
|
26
|
September 21, 2024
|
|
Mothur logfiles not found
|
|
2
|
33
|
August 3, 2024
|
|
Order lost after degap.seqs and classify.seqs
|
|
3
|
21
|
August 1, 2024
|
|
Running make.file mothur crashes
|
|
2
|
133
|
June 6, 2024
|
|
Unable to open silva.seed_v138.1
|
|
2
|
101
|
April 26, 2024
|
|
Unable to classify OTU with cluster.split
|
|
1
|
114
|
March 28, 2024
|
|
Summary Seqs command not working
|
|
2
|
135
|
April 5, 2024
|
|
New RDP reference files (v19)
|
|
2
|
194
|
April 5, 2024
|
|
MiSeq SOP problems
|
|
5
|
123
|
April 5, 2024
|
|
LEfSe Class Column missing if the comparison is not pairwise with mothur 1.48.0
|
|
1
|
126
|
February 18, 2024
|
|
LefSe error: about the ram
|
|
1
|
128
|
February 1, 2024
|
|
Error with remove.otus
|
|
4
|
266
|
November 12, 2023
|
|
Make.contigs is not creating Group file
|
|
2
|
345
|
October 28, 2023
|
|
Running Mothur in R: Error Utils class function mothurConvert-int
|
|
2
|
300
|
September 22, 2023
|
|
[ERROR} Your count table contains more than 1 sequence named
|
|
5
|
447
|
September 21, 2023
|