mothur

Fasta and count file mismatch in summary.seqs

Hi, can somebody help me with this. After running align.seqs with silva.bacteria, I tried running the command summary.seqs following the MiSeq SOP and keep getting an error. How do I fix this?

mothur > summary.seqs(fasta=stability.paired.trim.contigs.good.unique.align, count=stability.paired.trim.contigs.good.count_table)

Using 4 processors.
[ERROR]: Your count file contains 1320347 unique sequences, but your fasta file contains 435712. File mismatch detected, quitting command.

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