About the Commands in mothur category
|
|
1
|
323
|
April 25, 2019
|
Using Mothur to analyze plant rbcl data
|
|
2
|
28
|
April 15, 2021
|
How to to trim variable length ITS seqs
|
|
3
|
38
|
April 11, 2021
|
All sequences removed with screen.seqs
|
|
6
|
85
|
April 8, 2021
|
Issues with setting up pipeline using NCBI SRAs
|
|
4
|
54
|
April 2, 2021
|
How to get list of unique OTUs using Venn command ? I am able to get only list of shared OTUs
|
|
2
|
41
|
March 28, 2021
|
Make.biom for picrust
|
|
2
|
37
|
March 28, 2021
|
Mothur workflow basics and reproducibility
|
|
2
|
59
|
March 25, 2021
|
Filter.seqs what kind of numbers should be being removed?
|
|
2
|
39
|
March 14, 2021
|
Cluster command is giving me a large number OTUs, more than it should be
|
|
4
|
58
|
March 14, 2021
|
Remove.seqs Error: length is not in your count table
|
|
2
|
61
|
March 11, 2021
|
Pre.cluster Blanks and segmentation errors
|
|
4
|
57
|
March 7, 2021
|
Total Number of OTU
|
|
2
|
75
|
March 5, 2021
|
Screen.seqs getting rid of most sequences
|
|
3
|
48
|
March 1, 2021
|
Problem with pre.cluster or chimera.vsearch
|
|
5
|
69
|
February 28, 2021
|
Dist.seqs : [ERROR]: your sequences are not the same length, aborting
|
|
5
|
63
|
February 28, 2021
|
Unique.seqs is removing a lot of sequences
|
|
5
|
67
|
February 14, 2021
|
Make.contigs help
|
|
8
|
121
|
February 13, 2021
|
Make.contigs command killed
|
|
4
|
89
|
February 8, 2021
|
Problem with classify.seqs for fungi in mothur 1.44
|
|
3
|
100
|
February 6, 2021
|
Inflated unique sequence count
|
|
2
|
80
|
February 6, 2021
|
RAM issue with clustering OTUs
|
|
4
|
112
|
February 6, 2021
|
Unifrac with groups vs count file
|
|
3
|
110
|
January 31, 2021
|
Processed killed run in batched mode
|
|
3
|
75
|
January 24, 2021
|
Removing Sequence Primers
|
|
13
|
4677
|
January 14, 2021
|
screen.seqs removes most sequences
|
|
22
|
15477
|
January 11, 2021
|
Unifrac.weighted analysis problem
|
|
2
|
63
|
January 21, 2021
|
Make.shared is not generating a list file
|
|
2
|
125
|
January 15, 2021
|
Get.groups(shared=) -- making a shared file that merges sample ids with grouping factors to use as the input for get.groups command
|
|
4
|
83
|
January 5, 2021
|
Error chimera.vsearch
|
|
3
|
93
|
January 1, 2021
|