These warnings happened during the first step of our batch:
mothur > fastq.info(file=micycle.txt, pacbio=T)
[WARNING]: expected a name with + as a leading character, ignoring.[WARNING]: missing quality for , ignoring.[WARNING]: Lengths do not match for sequence m84073_250826_140521_s3/192484337/ccs. Read 761 characters for fasta and 0 characters for quality scores, ignoring read.3234
[WARNING]: Lengths do not match for sequence m84073_250826_140521_s3/7804572/ccs. Read 1526 characters for fasta and 144 characters for quality scores, ignoring read.24885
Then during summary seqs this happened: mothur > summary.seqs(fasta=current, count=current)
[ERROR]: Your count file contains 7407877 unique sequences, but your fasta file contains 7426701. File mismatch detected, quitting command.
I think the above warning may be causing the mismatch in the count and fasta files. What can I do to fix this?