mothur > summary.seqs(count=stability.trim.contigs.good.count_table)
output:
Using stability.trim.contigs.good.unique.fasta as input file for the fasta parameter.
Using 20 processors.
Start End NBases Ambigs Polymer NumSeqs
Minimum: 1 50 50 0 3 1
2.5%-tile: 1 167 167 0 4 327623
25%-tile: 1 248 248 0 4 3276221
Median: 1 441 441 0 5 6552441
75%-tile: 1 463 463 0 6 9828661
97.5%-tile: 1 467 467 0 8 12777259
Maximum: 1 500 500 0 8 13104880
Mean: 1 349 349 0 5
of unique seqs: 5940853
total # of seqs: 13104880
It took 63 secs to summarize 13104880 sequences.
Output File Names:
stability.trim.contigs.good.unique.summary
aligning the sequences you are analyzing
instructed by Pat Schloss
mothur > pairwise.seqs(fasta=stability.trim.contigs.good.unique.fasta)
As I ran this command, MOTHUR stays on for like 5 minutes then aboerting. Any idea why? How to rectify this?