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Mothur workflow basics and reproducibility
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|
2
|
97
|
March 25, 2021
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Filter.seqs what kind of numbers should be being removed?
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2
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73
|
March 14, 2021
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Cluster command is giving me a large number OTUs, more than it should be
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4
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105
|
March 14, 2021
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Remove.seqs Error: length is not in your count table
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2
|
103
|
March 11, 2021
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Pre.cluster Blanks and segmentation errors
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4
|
111
|
March 7, 2021
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Total Number of OTU
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2
|
109
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March 5, 2021
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Screen.seqs getting rid of most sequences
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3
|
89
|
March 1, 2021
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Problem with pre.cluster or chimera.vsearch
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5
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130
|
February 28, 2021
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Dist.seqs : [ERROR]: your sequences are not the same length, aborting
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5
|
99
|
February 28, 2021
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Unique.seqs is removing a lot of sequences
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5
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100
|
February 14, 2021
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Make.contigs help
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8
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161
|
February 13, 2021
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Make.contigs command killed
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4
|
112
|
February 8, 2021
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Problem with classify.seqs for fungi in mothur 1.44
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3
|
123
|
February 6, 2021
|
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Inflated unique sequence count
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|
2
|
101
|
February 6, 2021
|
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RAM issue with clustering OTUs
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4
|
147
|
February 6, 2021
|
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Unifrac with groups vs count file
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3
|
148
|
January 31, 2021
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Processed killed run in batched mode
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3
|
111
|
January 24, 2021
|
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Removing Sequence Primers
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|
13
|
4846
|
January 14, 2021
|
|
screen.seqs removes most sequences
|
|
22
|
15554
|
January 11, 2021
|
|
Unifrac.weighted analysis problem
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|
2
|
93
|
January 21, 2021
|
|
Make.shared is not generating a list file
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|
2
|
172
|
January 15, 2021
|
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Get.groups(shared=) -- making a shared file that merges sample ids with grouping factors to use as the input for get.groups command
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|
4
|
99
|
January 5, 2021
|
|
Error chimera.vsearch
|
|
3
|
126
|
January 1, 2021
|
|
Silva 138-GTDB new taxonomy for Lactobacilli
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|
2
|
100
|
December 31, 2020
|
|
Pre.cluster set diff for 95% nucleotide identity
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|
2
|
145
|
December 24, 2020
|
|
How to go about grouping in mothur?
|
|
4
|
198
|
December 13, 2020
|
|
top matches in align.seqs
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|
3
|
1322
|
November 30, 2020
|
|
Seq.error output strange
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|
5
|
99
|
November 28, 2020
|
|
align.seqs: number of read in sequences
|
|
3
|
1849
|
November 16, 2020
|
|
Cannot demultiplex fastq files with barcodes in the header
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|
4
|
160
|
November 26, 2020
|