mothur

Still trying to precluster ITS2

#1

reviving this issue Pre.cluster crash ITS2

I started my analysis from the beginning with 1.41.3 and it still hangs on pre.clustering. This time it got through 163 of 314 samples before hanging. I requested 450gb ram so shouldn’t be a ram issue.

#2

oh actually maybe it’s not hung and I’m just impatient. after no writes to the logfile from ~noon-2 (when I posted), it has written to the log file about 2 hrs ago.

I should have specified, I’m using 32 processors with 450GB RAM. If this hangs, I’ll try decreasing my processors for the pre.cluster step.