|
File mismatch detected after align.seqs or screen.seqs
|
|
2
|
200
|
December 15, 2023
|
|
Installing mothur error
|
|
7
|
198
|
December 5, 2023
|
|
Beginner questions: Working step for organism identification
|
|
1
|
166
|
November 30, 2023
|
|
Pre.cluster in unaligned, or cluster split?
|
|
4
|
190
|
December 10, 2023
|
|
Pcr.seqs does not remove logical amount of sequences with different values of pdiffs/rdiffs
|
|
14
|
467
|
November 28, 2023
|
|
Count.groups discrepancy?
|
|
3
|
212
|
December 2, 2023
|
|
Several sequences missing primers and many ambiguous base calls
|
|
7
|
287
|
November 24, 2023
|
|
Lefse: no class column with more than 2 classes
|
|
1
|
142
|
November 24, 2023
|
|
The best region for 16S sequencing
|
|
1
|
190
|
November 2, 2023
|
|
Error with remove.otus
|
|
4
|
215
|
November 12, 2023
|
|
Issue with venn command
|
|
3
|
235
|
November 2, 2023
|
|
Phylotypes classification at different taxonomic levels
|
|
1
|
177
|
October 30, 2023
|
|
Preparing for analysis
|
|
2
|
187
|
November 9, 2023
|
|
Get.oturep using abundance method
|
|
11
|
252
|
October 27, 2023
|
|
Using pcr.seqs without a forward primer in the oligo file results in first four bases being removed
|
|
2
|
257
|
October 23, 2023
|
|
Issue with pre.cluster
|
|
10
|
420
|
October 30, 2023
|
|
Alignment command
|
|
2
|
206
|
October 18, 2023
|
|
Overlapping V3-V4 using v2 2x250 bp
|
|
3
|
308
|
October 18, 2023
|
|
Unique names issue
|
|
2
|
199
|
October 18, 2023
|
|
Make.contigs is not creating Group file
|
|
2
|
236
|
October 28, 2023
|
|
Running mothur in hpc with conda
|
|
10
|
262
|
October 10, 2023
|
|
Generating ASVs that all have a size of one
|
|
12
|
312
|
October 10, 2023
|
|
Difference between Phylotype and OTUs
|
|
2
|
271
|
October 12, 2023
|
|
ASV and OTU same number of sequences
|
|
2
|
312
|
October 12, 2023
|
|
Database contains Oomycete
|
|
1
|
232
|
September 18, 2023
|
|
V4 region - Archaea and Bacteria at genus level
|
|
3
|
233
|
September 14, 2023
|
|
Keeping OTUs/ASVs with filter.shared
|
|
2
|
185
|
September 24, 2023
|
|
NextSeq2000 files
|
|
26
|
610
|
September 24, 2023
|
|
Segmentation fault in pcr.seqs
|
|
9
|
234
|
September 23, 2023
|
|
Running Mothur in R: Error Utils class function mothurConvert-int
|
|
2
|
234
|
September 22, 2023
|