I tried running the classify.seqs function using the following files reference=silva.nr_v138_2.align taxonomy=silva.nr_v138_2.tax, but it returns the following message
AB515328.GQTSp198’ is in your template file and is not in your taxonomy file.
Please correct.
I used the same files through galaxy and it generated the files, can someone help me using command line, I’m using version 1.48.0
Can you redownload the reference files and try again? We had to update them because there was a problem and I worry you got the older version.
Pat
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