Problems in ''classify.seqs"

Followed Miseq SOP, “classify.seqs” was to remove the "“undesirable” sequence in our dataset.
mothur>classify.seqs(fasta=.fasta,count=.count_table,reference=silva.gold.ng.fasta,taxonomy=silva.bacteria.silva.tax,cutoff=80)

Z14096.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z21936.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z21979.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z22781.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z23157.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z23158.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z23160.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z25741.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z25742.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z26315.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z26921.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z26922.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z26923.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z26926.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z26927.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z26932.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z26935.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z26939.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z29975.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z30542.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z31657.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z31658.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z32636.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z35304.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z35305.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z35435.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36272.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36273.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36296.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36925.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36926.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36927.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36928.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36929.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36930.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36933.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36934.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36935.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z36936.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z37136.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z37150.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z37151.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z37989.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z38003.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z38007.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z38018.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z38020.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z38023.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z46664.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z46750.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z46751.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z46752.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z46753.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z46754.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z47544.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z49117.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z49264.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z49738.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z49830.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z68095.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z68096.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z68097.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z68098.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z68099.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z68100.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z68101.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z70001.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z70002.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z70004.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z70005.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z70006.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z70007.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z70008.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z70248.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z71365.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z73313.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z73631.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76651.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76652.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76653.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76654.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76655.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76658.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76659.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76660.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76663.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76665.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76666.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76667.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76669.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76671.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76672.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76673.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z76675.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z78203.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z78204.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z78206.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z83204.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z83205.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z94012.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95707.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95708.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95709.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95710.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95711.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95712.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95713.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95714.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95715.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95716.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95717.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95718.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95719.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95720.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95721.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95722.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95723.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95724.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95725.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95726.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95727.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95728.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95729.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95730.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95731.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95732.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95733.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95734.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95735.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95736.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z95737.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96077.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96079.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96080.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96081.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96085.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96086.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96087.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96089.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96090.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96093.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96095.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96096.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96097.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z96098.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z99997.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z99998.1 is in your taxonomy file and is not in your template file. Please corre
ct.
Z99999.1 is in your taxonomy file and is not in your template file. Please corre
ct.
DONE.
It took 24 seconds get probabilities.

such results came out

  1. what is wrong with “Z99999.1 is in your taxonomy file and is not in your template file. Please corre
    ct.”
    2)a picked “*.taxonomy” output file was not found, therefore I could not continue to run “remove.lineage”.
    Is there anything wrong with my command?? or else ?

Thanks for your advice

You want reference=silva.bacteria.fasta not reference=silva.gold.ng.fasta