I have 2 jobs running on the cluster. Both died at uchime with no error in mother. I also write an error file. one job says 48063 Bus error. The other begins:
mothur >
chimera.uchime(fasta=current, count=current, dereplicate=t)
Using 2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.count_table as input file for the count parameter.
Using 2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.fasta as input file for the fasta parameter.
Using 32 processors.
uchime by Robert C. Edgar
http://drive5.com/uchime
This code is donated to the public domain.
Checking sequences from 2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.fasta ...
Reducing processors to 8.
/******************************************/
Running command: split.groups(groups=0613HF1N.0613HF1N, fasta=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.fasta, count=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.count_table)
/******************************************/
Running command: split.groups(groups=0613HF1R.0613HF1R, fasta=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.fasta, count=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.count_table)
/******************************************/
Running command: split.groups(groups=0613Kelp2B.0613Kelp2B, fasta=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.fasta, count=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.count_table)
/******************************************/
Running command: split.groups(groups=0613Kelp2L.0613Kelp2L, fasta=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.fasta, count=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.count_table)
/******************************************/
Running command: split.groups(groups=0613Kelp2N.0613Kelp2N, fasta=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.fasta, count=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.count_table)
/******************************************/
Running command: split.groups(groups=0613Kelp2R.0613Kelp2R, fasta=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.fasta, count=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.count_table)
/******************************************/
Running command: split.groups(groups=0613HF1L.0613HF1L, fasta=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.fasta, count=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.count_table)
/******************************************/
Running command: split.groups(groups=RID633Blank.RID633Blank, fasta=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.fasta, count=2018KelpMouseStudy.trim.contigs.good.unique.good.filter.precluster.count_table)
That’s the end of the logfile. Here’s the top of the error log that I had sbatch write