HI,
I am trying to run a summary.seqs command using a fasta and names file and I’m getting the error that two of the names that are present in the fasta file are not in the names file. However, when I check my names file and search for those names, the names are present. Hence, I can’t do a proper summary.seqs to look at the number of unique seqs and all seqs. If I run the summary.seqs without the names file, Mothur picks up the same file I used previously as the matching names file, and spits out a summary table. How do I deal with names that are actually present in my names file, but Mothur can’t seem to recognise as being present?
Ex: summary.seqs(fasta=allenv.groups.fasta, name=allenv.groups.names, processors=2)
[ERROR]: ‘barcode=env2PL19D;IWNQ2AP01EIZI7’ is not in your name or count file, please correct.
[ERROR]: ‘barcode=env1ES00;IQMYI5B02GWM4F’ is not in your name or count file, please correct.
If I run:
summary.seqs(fasta=allenv.groups.fasta, processors=2),
I get a summary output and Mothur will use name=allenv.groups.names as a namefile it can take to match my fasta file, but not seem to have issues with this.
Thanks in advance for help.