A minor bug - when using the metastats command the usual output to the screen lacks the list of output file names:
mothur > metastats(shared=run066_09122016.an.0.03.pick.0.03.subsample.shared, design=run066_09122016.design.siteyear, sets=Pfn2014-Pfn2015-Ey2014-Ey2015, processors=48)
Using 48 processors.
0.03
Comparing Ey2015 and Ey2014...
Comparing Pfn2014 and Ey2015...
Comparing Pfn2015 and Ey2014...
Comparing Pfn2014 and Ey2014...
Comparing Pfn2015 and Pfn2014...
Comparing Pfn2015 and Ey2015...
Output File Names:
mothur >
Also these random extra empty lines.