I’m running my fungal batch on ~1200 samples. it took 7hrs to go through make.contigs - start of dist.shared, now it’s been 18hrs on just that step so I assume it’s hung. I tried restarting in 1.39.5 and the dist completed in less than an hour.
I’ll email the logfiles since they’re huge. The shared is also huge 94MB because 41k otus.