mothur

Dist.shared hangs in 41.1


#1

I’m running my fungal batch on ~1200 samples. it took 7hrs to go through make.contigs - start of dist.shared, now it’s been 18hrs on just that step so I assume it’s hung. I tried restarting in 1.39.5 and the dist completed in less than an hour.

I’ll email the logfiles since they’re huge. The shared is also huge 94MB because 41k otus.


#2

Could you compress and send the shared file to mothur.bugs@gmail.com?


#3

do you have access to globus? I can transfer the shared that way if you all have it


#4

I don’t. Could you send it with google drive?


#5

I’ll do that, may take a few hrs


#6

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