When I tried to run the rarefaction.shared command, I got a “Segmentation fault (core dumped)”, using 1.41.3 in linux RedHat.
However, it works fine in v.1.39.5.
Best regards,
Caio Rachid
When I tried to run the rarefaction.shared command, I got a “Segmentation fault (core dumped)”, using 1.41.3 in linux RedHat.
However, it works fine in v.1.39.5.
Best regards,
Caio Rachid
Hello,
Here is the logfile from the first time the error happened (mothur.1549547102-1.logfile / the error is in the end), and the logfile when it worked, with a older version (mothur.1549557032.logfile).
(Attachment design is missing)
(Attachment mothur.1549547102.logfile is missing)
(Attachment ok.opti_mcc.0.03.abund.shared is missing)
(Attachment mothur.1549557032.logfile is missing)
Thanks for reporting this bug and sending your files. The rarefaction.shared command is having an issue running with the design file. I have fixed this and the change will be part of our next release. In the meantime you can work around the issue by running each set individually.
mothur > get.groups(shared= ok.opti_mcc.0.03.abund.shared, groups=C8-C9-C10-C11-C12) - select set Y
mothur > rarefaction.shared(shared=current) - run rarefaction.shared for set Y
mothur > get.groups(shared= ok.opti_mcc.0.03.abund.shared, groups=C13-C14-C15-C16-C17) - select set O
mothur > rarefaction.shared(shared=current) - run rarefaction.shared for set O
mothur > get.groups(shared= ok.opti_mcc.0.03.abund.shared, groups=C18-C19-C20-C21-C22) - select set N
mothur > rarefaction.shared(shared=current) - run rarefaction.shared for set N
This topic was automatically closed 10 days after the last reply. New replies are no longer allowed.