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Reading matrix: ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||AAError: Sequence ‘HVP’ was not found in the names file, please correct
I've searched the dist, list, and names files. I have lots of sequences the begin with HVP but didn't find any that were just HVP. I'm running 1.31
When I run your files with set.dir(debug=t), I see:
HVP GM0HNNG02B3VLN 0.1858
Did you run dist.seqs with processors > 1? We had a recent report, .dist file with more than 3 columns of merging issues when the user ran out of disk space.
Thanks Sarah, I’ll try again. so weird that grep 'HPV ’ didn’t catch that. I think I did use multiple processors creating this dist file (using cluster.split) but it was a few months ago so will take some digging to find the correct logfile
But I’m not able to find it through grep. went ahead and opened the whole thing in vim. the actual last 2 lines of the dist file are
HVPQ45002I7MT7 GM0HNNG02B3VLN 0.1858
HVP
I deleted the last line and am trying get.oturep again. HVPQ45002 is the last plate for that batch of sequences but I’m not certain that the file truncated properly