get.oturep method

Commands in mothur
1

Hi,
I’m new in the MOTHUR world…
I have some problems with the get.oturep command.
I would like to have the most abundant sequence as represenative sequence of my OTUs.
so I’ve done:

get.oturep(list=GH11_TOTAL.unique.good.filter.unique.precluster.pick.an.unique_list.list,fasta=GH11_TOTAL.unique.good.filter.unique.precluster.pick.fasta,
count=GH11_TOTAL.unique.good.filter.unique.precluster.pick.count_table,method=abundance)

but mothur gives me this ERROR MESSAGE:

unique 11857
0.01 11473
[ERROR]: group HWI-M00234_71_000000000-A441H_1_2106_13868_14972_CGTACG is not in your count table. Please correct.

I’ve check and I have this sequences in all the files I’ve used as input.

Some one can tell me where I have make a mistake?! :frowning: :frowning:

thank you

2

This is a bug with the get.oturep command using the count file. It will be fixed in our next release, coming very soon. Thanks for reporting the issue.