get.oturep bug?


I am running Linux version, Using ReadLine, Running 64Bit Version mothur v.1.21.0 Last updated: 7/27/2011

I tried to run the get.oturep with the current command and it didn’t like it. When I typed in the files that mothur intended on using then it ran the command. Is this a bug?

mothur > get.current()

Current files saved by mothur:

mothur > get.oturep()

Using BLOOM.clones.filter.fasta as input file for the fasta parameter.
Using as input file for the list parameter.
Using BLOOM.clones.filter.phylip.dist as input file for the phylip parameter.
File format error.

mothur > get.oturep(fasta=BLOOM.clones.filter.fasta,, phylip=BLOOM.clones.filter.phylip.dist)

Reading matrix: ||||||||||||||||||||||||||||||||||||||||||||||||||||


this command worked and I got the rest of the desired output.

Thanks for bringing this to our attention. It will be fixed in the 1.22.0 release.