Hi,
I am running Linux version, Using ReadLine, Running 64Bit Version mothur v.1.21.0 Last updated: 7/27/2011
I tried to run the get.oturep with the current command and it didn’t like it. When I typed in the files that mothur intended on using then it ran the command. Is this a bug?
mothur > get.current()
Current files saved by mothur:
fasta=BLOOM.clones.filter.fasta
list=BLOOM.clones.filter.phylip.an.list
phylip=BLOOM.clones.filter.phylip.dist
rabund=BLOOM.clones.filter.phylip.an.rabund
sabund=BLOOM.clones.filter.phylip.an.sabund
taxonomy=BLOOM.clones.filter.ncbi.taxonomy
processors=7
mothur > get.oturep()
Using BLOOM.clones.filter.fasta as input file for the fasta parameter.
Using BLOOM.clones.filter.phylip.an.list as input file for the list parameter.
Using BLOOM.clones.filter.phylip.dist as input file for the phylip parameter.
File format error.
mothur > get.oturep(fasta=BLOOM.clones.filter.fasta, list=BLOOM.clones.filter.phylip.an.list, phylip=BLOOM.clones.filter.phylip.dist)
********************###########
Reading matrix: ||||||||||||||||||||||||||||||||||||||||||||||||||||
ETC…
this command worked and I got the rest of the desired output.