|
File naming (.cons.taxonomy)
|
|
3
|
87
|
December 3, 2022
|
|
Error with get.current / set.current
|
|
2
|
69
|
December 3, 2022
|
|
Warning Some of your sequences generated alignments that eliminated too many bases
|
|
5
|
1355
|
December 1, 2022
|
|
Protocol for dealing with 16s full-length sequencing data by Pacbio
|
|
8
|
113
|
December 1, 2022
|
|
Error with make.contigs
|
|
3
|
90
|
December 1, 2022
|
|
Pull representative ASV from each sample based on relabund
|
|
2
|
61
|
December 11, 2022
|
|
Paired sample analyses
|
|
3
|
60
|
December 1, 2022
|
|
Query regarding 16S rRNA ITS sequencing
|
|
6
|
92
|
November 29, 2022
|
|
Classify.seqs : adding extra data columns in tax.summary file
|
|
3
|
4995
|
December 9, 2022
|
|
Problem with accented characters in interactive window (but logfile OK)
|
|
3
|
54
|
December 9, 2022
|
|
Align.seq with silva database and classify.seq using PR2 database
|
|
1
|
38
|
November 28, 2022
|
|
Classify.seqs error
|
|
1
|
43
|
November 28, 2022
|
|
Get.groups command
|
|
4
|
55
|
December 8, 2022
|
|
Chimera.vsearch output files
|
|
1
|
74
|
November 23, 2022
|
|
Count.seqs(compress=f) results in a compressed count_table
|
|
2
|
82
|
November 22, 2022
|
|
Triming of E. coli
|
|
3
|
53
|
December 1, 2022
|
|
Making oligos file from our primers?
|
|
2
|
77
|
December 1, 2022
|
|
The same barcodes to different samples?
|
|
4
|
68
|
December 1, 2022
|
|
How to speed up the process using an HPC cluster for OTU allocation
|
|
1
|
88
|
November 21, 2022
|
|
Amova analysis
|
|
3
|
1631
|
November 21, 2022
|
|
Homova analysis
|
|
1
|
63
|
November 21, 2022
|
|
Add you feature for subsample.seqs command
|
|
2
|
4843
|
November 21, 2022
|
|
Query regarding otu file generation
|
|
4
|
56
|
November 26, 2022
|
|
SOP for Pacbio amplicon sequences (full length 16S)
|
|
1
|
560
|
November 13, 2022
|
|
Hypervariable region
|
|
2
|
97
|
November 11, 2022
|
|
Count file and fasta file mismatch
|
|
3
|
95
|
November 12, 2022
|
|
Screen.seqs removed all the sequences
|
|
4
|
120
|
November 12, 2022
|
|
Zero-length input fastq sequence in make.contigs
|
|
1
|
53
|
November 1, 2022
|
|
Renaming the sequences in fasta file for asv based analysis
|
|
5
|
100
|
October 28, 2022
|
|
Nmds output -nan
|
|
4
|
76
|
October 27, 2022
|