Hello all,
I am a new user in mothur and I do not have any background and I hope you gonna help me.
I used this command:
mothur > screen.seqs(fasta=stability.trim.contigs.good.unique.abund.align,count=stability.trim.contigs.good.abund.count_table,summary=stability.trim.contigs.good.unique.abund.summary,start=3,end=11011,maxhomop=6)
and I get these output File Names:
stability.trim.contigs.good.unique.abund.good.summary
stability.trim.contigs.good.unique.abund.good.align
stability.trim.contigs.good.unique.abund.bad.accnos
stability.trim.contigs.good.abund.good.count_table
Then I run this command:
summary.seqs(fasta=stability.trim.contigs.good.unique.abund.good.align,count=stability.trim.contigs.good.abund.good.count_table)
and I get this Error
[ERROR]: stability.trim.contigs.good.unique.abund.good.align is blank. Please correct. Error in reading your fastafile, at position -1. Blank name.
I tried many time to remove all the output file and to start from the beginning and still I have the same problem. Then I tried to change the maxhomop=6
to maxhomop=8
and also one time without maxhomop and still the same Error.
I would be very happy If you help me.
Thank you