Hi there,
I am following the MiSeq SOP for mothur and getting confused about how to get the Genus-level information.
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In the section Phylotypes, the paragraph states “1 through 6 listed; these correspond to Genus through Kingdom”, which means that label=1 shows Genus level.
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From the file *.tax.summary outputted from classify.otu, it seems that taxlevel = 6 indicates Genus level? (0 -> Root and 1 -> Bacteria)
If my understanding is correct, why here is using different numbers (1 and 6) to indicate the Genus level?
Many thanks,
Dapeng