Taxonomy levels

Commands in mothur
1

Hi Guys

Got my classify file and an example line would be

GAKP9UA03GQYTRS01|4965|3 Bacteria_100 Firmicutes_100 Clostridiales_100 Johnsonella_et_rel._98.9 Johnsonella_et_rel._97.8 Ruminocoocus_49.1 Ruminococcus_productus_45.1 unclassified unclassified unclassified unclassified

Does any one have a full list of what taxonomic level each entry hits, I know the 1st to 3rd (Kingdom, phylum, class) but where are we heading after that?

cheers

Julian

ps thanks to all who helped with the group file issue

2

It goes Domain, Phylum, Class, Order, Family, Genus, Species

…with the occasional sub-Order, sub-Species, etc.

You can also compare it (or use) the RDP classifier @ http://rdp.cme.msu.edu/

Cheers,

Ryan