I generated a venn diagram of my shared file with a workaround once suggested by westcott:
However, the total richness of both groups as announced in the .svg file doesn’t correspond to the number of OTUs I have in that shared file.
In the .svg it says “The total richness for all groups is 3125” but my shared file has 4304 OTUs.
Is it a bug or am I missing something?
Thank’s a lot!
Does your shared file have more than the rhen and inv groups in it?
No it doesn’t.
It actually gives the same result when I do
Could you send your shared and log file to firstname.lastname@example.org?
From your shared file you have 3125 OTUs.
label Group numOtus Otu00001 Otu00002 …
0.03 inv 3125 24185 2570 …
0.03 rhen 3125 7405 4712 …
That’s true but the original shared file which I use in the merge.groups command has 4303 OTUs.
And as I replied to PSchloss I don’t have other groups than inv and rhen in my shared file so I expect to have all OTUs in the end.
Does it make sense if I send you my original shared file and my design file?
Yes, can you send me the original files so I can run the merge.files and venn command?
To complete this, there was indeed a bug which is now corrected in the updated version, 1.37.1
Thanks again to Sarah for her patience and her quick help!
You guys from mothur are awesome!