I am attempting to make a biom file (using make.biom) from a data set, and the output biom file only has one sample in it when it should have many. This seems to be an isolated occurrence, as other biom files that I have created contain all of the included samples.
I thought it may be related to the sampleIDs, but I manually changed them, and the problem was not resolved.
I am using Mothur v1.43.0. Has anyone seen this before? I can provide more info about build, sampleIDs etc.