I have a taxonomy table which I’m trying to convert to biom, with make.biom. Since I made the table outside of mothur, I mimicked the example provided, converting my table into a shared and a taxonomy file and tried using make.biom with constaxonomy command. However, from my 14 samples, only the first gets converted to biom, with only its 2.2k OTUs instead of all samples with ~3.7k OTUs. Am I missing something?
Here is a snipet of my table:
Many thanks for the attention,