Make.biom with taxonomy


I have used the following mothur script:
make.biom(shared=BA_rdp.unique.subsample.shared, constaxonomy=BA_rdp.cons.taxonomy)

I was hoping to get a biom table lookit like this:

OTUS Taxonomy Sample1 Sample2 Sample3
OTU1 Archaea 5 0 1
OTU2 Bacteria 1000 2 3
OTU3 Archaea 40 100 50

However, the script above only provides the OTUs column and sample columns. Is there a way to do this aside from R magic?

Thanks and have a happy new year!

Sorry, you’re going to be on your own wiht this one.