I mean in the new version, there is no “processor” parameters. Thus, the speed becomes slow.
So should I keep using older version (which has the processor) parameter?
At the beginning, I thought the new version would be faster. But it is not.
Sorry for unclear description.
In the rewrite of mothur’s threaded code for version 1.40.0, we removed the processors option from the rarefaction.single command. We have plans to address this in a later release. You can follow the progress here, https://github.com/mothur/mothur/issues/546.