mothur

Rarefaction.single parameters processor

command:
version 1.44.3
#rarefaction.single(shared=./OTU_diversity.xls, calc=sobs-chao-ace-shannon-simpson-coverage, processors=8, outputdir=./, freq=500)
Can not run 8 processors, just use 1 processor 200% cpu, how to achieve 8 processor ?

Hi - are you running an excel spreadsheet through rarefaction.single? It needs to be a shared file in text format and not excel format. Also, many samples do you have in your shared file?

Pat

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