question on get.sharedseqs command

Commands in mothur
1

Dear Dr Schloss

I am trying to use get.sharedseqs command in mothur. My aim is to get shared OTUs and unique OTUs across my all samples.

I downloaded the AbRecovery files to get two sample files which are required for this command. I do see abrecovery.groups file but I do not see any abrecovery.fn.list in that folder.

Could you please tell me where I can find a sample “abrecovery.fn.list”
Thank you
Gurdeep

2

Sorry about that, we need to update our documentation. Could you run the following two commands from within mothur to get the abrecovery.fn.list file?

read.dist(phylip=abrecovery.dist)
cluster()