question about get.oturep


I wanted to get a fasta file with the representative sequences for every OTU in my dataset. I managed to get that, but I wanted the names of the OTUs to be linked to the sequence names. At the moment all I have is >sequence name. Is there a simple way of doing this in mothur?

Many thanks


Have you used get.oturep? It should output the sequence name and the OTU name.