Hello,
I am currently attempting to use the merge.files command to merge 2 fasta files together and 2 qual files together. All files are in the same folder, and directory is set. I run the command and the output file is generated. However, the files do not appear in the specified folder, nor can I find them anywhere else. Any help would be greatly appreciated.
mothur > merge.files(input=pacbio_roots.6X.ccs.fasta-pacbio_roots.6X.ccs.rc.fasta, output=pacbio_roots.6X.combined.fasta)
Output File Names:
pacbio_roots.6X.combined.fasta
mothur > merge.files(input=pacbio_roots.6X.ccs.qual-pacbio_roots.6X.ccs.rc.qual, output=pacbio_roots.6X.combined.qual)
Output File Names:
pacbio_roots.6X.combined.qual
Thanks for reading and for any feedback,
-Buck C.