Hi, I’m trying to remove singletons using following command:
remove.rare(list=study.opti_mcc.list, count=study.count_table, nseqs=1, label=0.03)
It took 154053 secs (about 43 hours) for dist.seqs and only 17369 secs (about 5 hours) for cluster command. As far as I know, remove.rare should be much faster than these steps.
It is still running without showing any messages for more than 4 days.
When I try the remove.rare without count table, it finishes within a few seconds. However, I need to put count table for further analysis.
Could you please help me fix this problem?