mothur

Getting an error after running unique.seqs command

11000 6041
12000 6504
[ERROR]: You already have a sequence named C9410SVQ.01_12339209 in your fasta file, sequence names must be unique, please correct.
[ERROR]: You already have a sequence named F940TY37.05_20283888 in your fasta file, sequence names must be unique, please correct.
13000 6990

I don’t know how to fix this - no idea when the duplicate name was created, do you have ideas?

Hi,

Can you post the upstream commands you are running prior to this command? Also, what version and operating system are you using?

Pat

Thank you for your reply Pat!

I have been working with Windows and the mother version is 1.42.3

mothur > make.file(inputdir=J:\mothur_1, type=fastq, prefix=stability)

Can you post your stability file?

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