The tax summary output is very nice. However, I need full length taxon names (I mean, including all taxonomical levels) in the summary output. The simple format output does this, but I also need the totals at all taxonomical levels, like in the detailed format output. Is there any way to achieve this directly in mothur, or any tips how to easily convert the names afterwards? I’m now doing it in Excel in a way that takes too much time.
You would need to process this from the *.taxonomy file.