Error with get.current / set.current

Hello,

I am encountering an error with get.current/set.current. I apologize in advance for the very long file names…

Before quitting yesterday, I did get.current and then I renamed the file:

> get.current()

Current RAM usage: 5.152 Gigabytes. Total Ram: 63.6566 Gigabytes.

Current files saved by mothur:
accnos=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.BactV6_V8.wang.pick.accnos
column=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.dist
fasta=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.fasta
list=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.opti_mcc.list
phylip=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.opti_mcc.0.03.subsample.braycurtis.0.03.lt.dist
shared=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.opti_mcc.shared
taxonomy=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.BactV6_V8.wang.pick.pick.pick.pick.taxonomy
constaxonomy=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.opti_mcc.0.03.cons.taxonomy
count=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.count_table
processors=12
summary=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.summary

Current default directories saved by mothur:

  • C:\Users\Maxime\Desktop\Maxime_bioinfo\Pommery_16Sn*

*Current working directory: C:\Users\Maxime\Desktop\Maxime_bioinfo\Pommery_16Sn*

*Output File Names: *
current_files.summary

Here is the content of the file current_files_2022-11-07_1733.summary:

accnos=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.BactV6_V8.wang.pick.accnos
column=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.dist
fasta=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.fasta
list=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.opti_mcc.list
phylip=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.opti_mcc.0.03.subsample.braycurtis.0.03.lt.dist
shared=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.opti_mcc.shared
taxonomy=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.BactV6_V8.wang.pick.pick.pick.pick.taxonomy
constaxonomy=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.opti_mcc.0.03.cons.taxonomy
count=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.count_table
processors=12
summary=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.summary

But today, I first do the set.current() and I get an error:

> set.current(current=current_files_2022-11-07_1733.summary) and I get an error:

[ERROR]: mothur does not save a current file for 16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.opti_mcc.0.03.cons.taxonomy

Using 12 processors.

Using 12 processors.

Current files saved by mothur:
accnos=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.BactV6_V8.wang.pick.accnos
column=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.dist
fasta=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.fasta
list=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.opti_mcc.list
phylip=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.opti_mcc.0.03.subsample.braycurtis.0.03.lt.dist
shared=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.pick.opti_mcc.shared
taxonomy=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.BactV6_V8.wang.pick.pick.pick.pick.taxonomy
count=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.count_table
processors=12
summary=16Sn.trim.contigs.good.unique.good.filter.unique.precluster.denovo.vsearch.pick.pick.pick.summary

Output File Names:
current_files.summary

There is a constaxonomy file saved by get.current() that is not read by set.current().

I think for my own analyses, I don’t have to worry about this but still I wanted to report this error.

Yours,
Maxime

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