I’ve recently updated v .1.42.3 and I am having some issues with data processing. For example, pcr.seq command doesnt generate a name.file (although this could be put down to the fact that there’s no sequences to trim, so I could recycle the last name file). However, running precluster command, mothur doesnt generate a name file either and the output is one pick.fasta and one count.table (even if I’m not working with groups but with individual samples). Therefore, my new fasta file doesnt match my old name file and I cant continue the processing.
Does anybody know what might be happening or if this could be due to the new version of mothur??
Thank you in advance!