I’ve noticed a problem during what I interpret as the reassembling of temp distance files when multiple processors are used in dist.seqs. It sometimes happens that two lines are combined. Sometimes, not always. This results in an error that blocks the further clustering, since names are no more in sync in the two files. The error is like this:
Reading matrix: |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AAError: Sequence ‘BC08.02724’ was not found in the names file, please correct
In effect none of my sequence have this name becuase I labelled them with sample name followed by progressive integers, e.g. BC08.[1…N] so no “BC08.0” may be present. It is a merge of a true label and something else, e.g. another label or part of a distance.
Thanks for your support.