Hi,
I just ran dist.seq on some data and mothur reported the following
Output File Name:
~/Documents/SEQ_DATA/linum_tags/bac/bissett_bac.processed_good.filter.phylip.dist
It took 7992 to calculate the distances for 34797 sequences.
but the file doesn’t seem to exist:
andrew@andrew-desktop:~/Documents/SEQ_DATA/linum_tags/bac$ ls
bissett08-10-10LabeledparseTH bissett_bac.processed_chim.filter.fasta.summary bissett_bac.processed_good.filter.fasta.summary
bissett_bac.filter bissett_bac.processed_chim.names bissett_bac.processed_good.names
bissett_bac.processed_chim.fasta bissett_bac.processed_good.fasta seq_processing
bissett_bac.processed_chim.filter.fasta bissett_bac.processed_good.filter.fasta
I ran it again on another dataset:
Output File Name:
~/Documents/SEQ_DATA/linum_tags/bac/bissett_bac.processed_chim.filter.phylip.dist
It took 538 to calculate the distances for 9978 sequences.
and again no output file appeared.
Any suggestions as to where they might be would be appreciated
Thanks again,
Andrew