I’m running mothur v 1.33.3 and I have problems to make count_table after trim…
I have 22 samples from illumina, I have done at the beginning of my analysis a fasta and a groups file.
then trim.seqs and unique.seqs ;
and I’ve got this error:
Using 20 processors.
[ERROR]: processes reported processing 2362313 sequences, but group file indicates you have 6605628 sequences. Either you have a file mismatch or a process failed to complete the task assigned to it.
:?: I don’t know why… I have always done that in other version of mothur with less sequences and I never have this problem…
can you help me?
thanks a lot!
If you are using mac/linux can you tell me the results of the following…
wc -l PUECHABON_mergegroups.groups
grep -c “>” PUECHABON_merge.fasta
If you are in windows I need to know how many lines in are in the group and fasta files
thank you for your answer.
I’m using Linux,
the results you asked me is:
wc -l PUECHABON_mergegroups.groups= 6605628
grep -c “>” PUECHABON_merge.fasta= 6605628
Can you try the three steps with 1 processor?
Whit one processor it works…
Using 1 processors.
[ERROR]: processes reported processing 2298320 sequences, but group file indicates you have 6605628 sequences. Could you have a file mismatch?
It took 55 secs to create a table for 2298320 sequences.
Total number of sequences: 2298320
Output File Names:
thnak you very much!
Please send PUECHABON_mergegroups.groups and PUECHABON_merge.fasta to us at email@example.com along with the exact command you are running here.