Hi again :(,
I continued with my analysis but I can’t continue because I don’t know how execute properly the catchall command.
I downloaded it for linux, I installed mono as I thought that was ok, but when I execute the command I have this crash.
These are four different sequencing proyects with their respective barcodes. It fails in the first.
May it be a mono problem?
If mono is ok, how do I obtain the final.an.PASTURE1MATUREZONE.0.03.csv file?
I would be really glad if you could help me.
Oscar.
mothur > catchall()
Using final.an.shared as input file for the shared parameter.
Processing group PASTURE1MATUREZONE
0.03
CatchAll Version 3.1
input File: final.an.PASTURE1MATUREZONE.0.03.csv
output path: final.an.PASTURE1MATUREZONE.0.03.csv/
Unhandled Exception: System.IO.DirectoryNotFoundException: Could not find a part of the path "/home/oscar/Desktop/final.an.PASTURE1MATUREZONE.0.03.csv/final.an.PASTURE1MATUREZONE.0.03_Analysis.csv".
at System.IO.FileStream..ctor (System.String path, FileMode mode, FileAccess access, FileShare share, Int32 bufferSize, Boolean anonymous, FileOptions options) [0x00000] in <filename unknown>:0
at System.IO.FileStream..ctor (System.String path, FileMode mode, FileAccess access, FileShare share) [0x00000] in <filename unknown>:0
at (wrapper remoting-invoke-with-check) System.IO.FileStream:.ctor (string,System.IO.FileMode,System.IO.FileAccess,System.IO.FileShare)
at System.IO.StreamWriter..ctor (System.String path, Boolean append, System.Text.Encoding encoding, Int32 bufferSize) [0x00000] in <filename unknown>:0
at System.IO.StreamWriter..ctor (System.String path) [0x00000] in <filename unknown>:0
at (wrapper remoting-invoke-with-check) System.IO.StreamWriter:.ctor (string)
at MapleToCSharp.Main (System.String[] args) [0x00000] in <filename unknown>:0
[ERROR] FATAL UNHANDLED EXCEPTION: System.IO.DirectoryNotFoundException: Could not find a part of the path "/home/oscar/Desktop/final.an.PASTURE1MATUREZONE.0.03.csv/final.an.PASTURE1MATUREZONE.0.03_Analysis.csv".
at System.IO.FileStream..ctor (System.String path, FileMode mode, FileAccess access, FileShare share, Int32 bufferSize, Boolean anonymous, FileOptions options) [0x00000] in <filename unknown>:0
at System.IO.FileStream..ctor (System.String path, FileMode mode, FileAccess access, FileShare share) [0x00000] in <filename unknown>:0
at (wrapper remoting-invoke-with-check) System.IO.FileStream:.ctor (string,System.IO.FileMode,System.IO.FileAccess,System.IO.FileShare)
at System.IO.StreamWriter..ctor (System.String path, Boolean append, System.Text.Encoding encoding, Int32 bufferSize) [0x00000] in <filename unknown>:0
at System.IO.StreamWriter..ctor (System.String path) [0x00000] in <filename unknown>:0
at (wrapper remoting-invoke-with-check) System.IO.StreamWriter:.ctor (string)
at MapleToCSharp.Main (System.String[] args) [0x00000] in <filename unknown>:0
[ERROR]: the catchall program did not run properly. Please check to make sure it is located in the same folder as your mothur executable.