bug or user error?

Hi There,

I am looking at some cyanobacterial reads in my data. When i look through my taxonomy file, i notice that there are >6000 sequences affiliated to:

However, in the file the classification only goes to Family I level. I re-tired with print level 6 but, the Leptolyngbya do not appear. Any ideas why: could this be an actual a bug or more likely user error?


Hi all,

I just tried the on my files on a labmates mac (mothur v1.37.3) and the the taxonomy file now summaries correctly (Leptolyngbya are in the tax.summary file).

In comparison i am using mothur on a linux v.1.39.0


Could you try version 1.39.1,