I’m running summary.shared in v1.32.1 and 1.29 noticed something weird when i had exactly the same distances in a quick dirty iters=10 run as in the more thourough subsampling with iters=1000. looked at the std.dist and all the values are zero???
summary.shared(shared=fung.all.mar14.hil.shared, iters=2,processors=10, subsample=1500, distance=t, calc=thetayc)
I’ll try to ftp the shared file for you to test
thanks
can you run:
count.groups(shared= fung.all.mar14.hil.shared)
also, are you looking at the ave.dist file or the basic dist file?
aave dist and dist are identical (which is also weird)
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sure, I posted it on the wiki last week if that doesn’t work
Thanks for bringing this to our attention. The subsampling was not working properly. I will release a 1.33.3 later today to fix this. In the meantime as a workaround you can use the dist.shared command. It will give you the correct *ave.dist and *.std.dist files. The difference is it will not create the *.summary file for you.