mothur

sequences not in group file but in fasta


#1

I’m getting an error I’ve never seen before. make.contigs seems to work, but some sequences aren’t getting into the groups file? For one dataset I saw this with 1.39.5, switched to 1.40.5 and it went away. Second dataset, still seeing it in 1.40.5. I’ll send logfiles to mothur bugs

thanks Kendra


#2

Can you tell us how you’re running make.contigs and what OS you’re using?


#3

I moved over to github https://github.com/mothur/mothur/issues/480