Hi,
I’m using SOP for MiSeq and I have reached the screen.seqs. But every time I run the following command after some time it gets stucked on a random “Processing sequence: XXXXX” and I notised with top the decreased CPU from 16 or 8 to 1 CPU. Than I even get out quite difficult with Ctrl-C
mothur > screen.seqs(fasta=stability.trim.contigs.unique.align, count=stability.trim.contigs.count_tab
le, summary=stability.trim.contigs.unique.summary, start=2, end=17012, maxhomop=8, processors=16)
I have tryed with 8 processors, than 4, but is the same.
My CPU are 48 , 128RAM, 24TB array.
Here is the pastebin of a log - http://pastebin.com/MTUuHhWG
:roll: