Running Mothur in R: Error Utils class function mothurConvert-int

mothur bugs
1

Hi!
I am trying to run mothur through the R terminal and received the following error:

mothur > lefse(shared=egg_lefse.shared, design=egg_lefse.design, inputdir=mothur/)
Setting input directories to:
mothur/

You did not provide a class, using location_stat.

Comparing rejegg-egg:
[ERROR]: 0.0077982247570700085RAM used: 0.0063858Gigabytes . Total Ram: 16Gigabytes.

has occurred in the Utils class function mothurConvert-int. Please contact Pat Schloss at mothur.bugs@gmail.com, and be sure to include the mothur.logFile with your inquiry
-ne

Might you be able to help?
Thank you!
Rebecka

2

I figured it out! I was using relative abundance data instead of raw counts in my shared file.

3

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