Dear mothur developers,
I faced the problem running the following command in mothur: lefse(shared=popov.insect_fruct.shared, design=popov.insect_fruct.design, inputdir=~/BioInf/Bats_16S/Statistics/processed_data)
The error:
You did not provide a class, using Food.
Comparing Insectivores-Fructivorous:
[ERROR]: requesting groups not present in files, aborting.
Segmentation fault (core dumped)
Can you please help with solving this issue?
Yours respectfully,
Igor
Can you post the output of running count.groups(shared=popov.insect_fruct.shared) and can you post the contents of popov.insect_fruct.design?
Pat
Dear Prof. Schloss,
Thank you for your kind response.
Please, find the output of count.groups attached: Segmentation fault (core dumped)
The contents of the design:
| Group | Food |
|---|---|
| E6901 | Insectivores |
| E6902 | Insectivores |
| E6903 | Insectivores |
| E6904 | Insectivores |
| E6905 | Insectivores |
| E6906 | Insectivores |
| E6907 | Insectivores |
| E6908 | Insectivores |
| E6909 | Insectivores |
| E6910 | Insectivores |
| E6911 | Insectivores |
| E6912 | Insectivores |
| E6913 | Insectivores |
| E6914 | Insectivores |
| E6915 | Insectivores |
| E6916 | Insectivores |
| E6917 | Insectivores |
| E6918 | Insectivores |
| E6919 | Insectivores |
| E6920 | Insectivores |
| E6921 | Insectivores |
| E6922 | Insectivores |
| E6923 | Insectivores |
| E6924 | Insectivores |
| E6925 | Insectivores |
| E6926 | Insectivores |
| E6927 | Insectivores |
| E6928 | Insectivores |
| E6929 | Insectivores |
| E6930 | Insectivores |
| E6931 | Fructivorous |
| E6932 | Fructivorous |
| E6933 | Fructivorous |
| E6934 | Fructivorous |
| E6935 | Fructivorous |
| E6936 | Fructivorous |
| E6937 | Fructivorous |
| E6938 | Fructivorous |
| E6939 | Fructivorous |
| E6940 | Fructivorous |
| E6941 | Fructivorous |
| E6942 | Fructivorous |
| E6943 | Fructivorous |
| E6944 | Fructivorous |
| E6945 | Fructivorous |
| E6946 | Fructivorous |
| E6947 | Fructivorous |
| E6948 | Fructivorous |
| E6949 | Fructivorous |
| E6950 | Fructivorous |
| E6951 | Fructivorous |
| E6952 | Fructivorous |
| E6953 | Fructivorous |
| E6954 | Fructivorous |
| E6955 | Fructivorous |
| E6956 | Fructivorous |
| E6957 | Fructivorous |
| E6958 | Fructivorous |
| E6959 | Fructivorous |
| E6960 | Fructivorous |
| E6961 | Insectivores |
| E6962 | Insectivores |
| E6963 | Insectivores |
| E6964 | Insectivores |
| E6965 | Insectivores |
| E6966 | Insectivores |
| E6967 | Insectivores |
| E6968 | Insectivores |
| E6969 | Insectivores |
| E6970 | Insectivores |
| E6971 | Insectivores |
| E6972 | Insectivores |
| E6973 | Insectivores |
| E6974 | Insectivores |
| E6975 | Insectivores |
| E6976 | Insectivores |
| E6977 | Insectivores |
| E6978 | Insectivores |
| E6979 | Insectivores |
| E6980 | Insectivores |
| E6981 | Insectivores |
| E6982 | Insectivores |
| E6983 | Insectivores |
| E6984 | Insectivores |
| E6985 | Insectivores |
| E6986 | Insectivores |
| E6987 | Insectivores |
| E6989 | Insectivores |
| E6990 | Insectivores |
Can you post the output from running count.groups?
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