Hello,
I am trying to run QIIME2 qiime2-moving-pictures-tutorial with mothur pipeline. This data is single end fastq format for V4 region sequenced with HiSeq platfom.
I first ran
fastq.info(fastq=sequences.fastq)
followed by
trim.seqs(fasta=sequences.fasta,qual=sequences.qual,oligos=sample.oligos)
After this command I am getting empty trim, group and qual files
This is the link for metadata file from qiime2-moving-pictures-tutorial
https://data.qiime2.org/2018.11/tutorials/moving-pictures/sample_metadata.tsv
And my oligo file looks like
forward | GTGCCAGCMGCCGCGGTAA | |
---|---|---|
#reverse | GTGCCAGCMGCCGCGGTAA | |
barcode | AGCTGACTAGTC | L1S8 |
barcode | ACACACTATGGC | L1S57 |
barcode | ACTACGTGTGGT | L1S76 |
barcode | AGTGCGATGCGT | L1S105 |
barcode | ACGATGCGACCA | L2S155 |
barcode | AGCTATCCACGA | L2S175 |
barcode | ATGCAGCTCAGT | L2S204 |
barcode | CACGTGACATGT | L2S222 |
barcode | ACAGTTGCGCGA | L3S242 |
barcode | CACGACAGGCTA | L3S294 |
barcode | AGTGTCACGGTG | L3S313 |
barcode | CAAGTGAGAGAG | L3S341 |
barcode | CATCGTATCAAC | L3S360 |
barcode | CAGTGTCAGGAC | L5S104 |
barcode | ATCTTAGACTGC | L5S155 |
barcode | CAGACATTGCGT | L5S174 |
barcode | CGATGCACCAGA | L5S203 |
barcode | CTAGAGACTCTT | L5S222 |
barcode | ATGGCAGCTCTA | L1S140 |
barcode | CTGAGATACGCG | L1S208 |
barcode | CCGACTGAGATG | L1S257 |
barcode | CCTCTCGTGATC | L1S281 |
barcode | CATATCGCAGTT | L2S240 |
barcode | CGTGCATTATCA | L2S309 |
barcode | CTAACGCAGTCA | L2S357 |
barcode | CTCAATGACTCA | L2S382 |
barcode | ATCGATCTGTGG | L3S378 |
barcode | CTCGTGGAGTAG | L4S63 |
barcode | GCGTTACACACA | L4S112 |
barcode | GAACTGTATCTC | L4S137 |
barcode | CTGGACTCATAG | L5S240 |
barcode | GAGGCTCATCAT | L6S20 |
barcode | GATACGTCCTGA | L6S68 |
barcode | GATTAGCACTCT | L6S93 |
Can you help me to figure out what is wrong with this oligo file.
Thank you